Generate and display heatmaps of TCR similarity for each assay

Generates and displays ComplexHeatmaps of TCR similarity for each assay in a Seurat object.

TCRDistanceHeatmaps(
  seuratObj_TCR = NULL,
  assayList = NULL,
  resolution = 0.1,
  annotate_clusters = TRUE,
  verbose = FALSE
)

Arguments

seuratObj_TCR

A Seurat object containing one or more TCR distance assays.

assayList

Character vector of assay names to include. Default is NULL (all assays).

resolution

Numeric clustering resolution parameter matching metadata column suffix.

annotate_clusters

Boolean specifying whether to display clustering information.

verbose

Boolean controlling whether to display processing steps. Default is FALSE.

Value

Returns the patchwork object containing ComplexHeatmaps of the TCR distance data.

Examples

if (FALSE) { # \dontrun{
TCRDistanceHeatmaps(
  seuratObj_TCR = seuratObj,
  assayList = NULL,
  resolution = 0.1,
  annotate_clusters = TRUE,
  verbose = TRUE
)
} # }