Package index • tcrClustR

All functions
`ApplyClusteringResultsToSeurat()`	ApplyClusteringResultsToSeurat
`CalculateTcrDistances()`	CalculateTcrDistances
`DirichletClusterAnalysis()`	Dirichlet Process Cluster Analysis of TCR Distances
`ExpandDistancesToMatchSeuratObj()`	ExpandDistancesToMatchSeuratObj
`ExtractGroupDistanceVectors()`	Extract Within-Group TCR Distance Vectors
`GetDistanceMatrix()`	GetDistanceMatrix
`GetExampleMarkdown()`	Get Example Markdown
`PlotClusterMeans()`	Plot Cluster Mean Distances with Error Bars
`PlotMixingProportions()`	Plot Mixing Proportions per Cluster
`RunTcrClustering()`	RunTcrClustering
`RunTcrdist3()`	RunTcrdist3
`SetPythonExecutable()`	SetPythonExecutable
`SetupPythonEnvironment()`	Setup Python Environment for tcrClustR
`TCRDistanceHeatmaps()`	Generate and display heatmaps of TCR similarity for each assay
`TCRDistanceHistograms()`	Plot histograms of summed TCR distances by cluster for each assay
`VisualizeTcrDistances()`	VisualizeTcrDistances
`.FormatMetadata()`	Format metadata for processing

Reference